1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttgtcacttttgtatggtatagtgttttatcccaaatgttttctcagaactgctgtccactaatggtctatttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG
species | Zea mays |
transcript | GRMZM2G408989_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|211285777|gb|FL373355.1|FL373355
genomic: CACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|16920990|gb|BM074929.1|BM074929
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|6022165|gb|AW067093.1|AW067093
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|78023775|gb|DV492162.1|DV492162
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|91871428|gb|EB401415.1|EB401415
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|16922820|gb|BM075812.1|BM075812
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|60342889|gb|DN209862.1|DN209862
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|60344375|gb|DN211348.1|DN211348
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|14245658|gb|BG874240.1|BG874240
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|78080743|gb|DV509155.1|DV509155
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: GTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|211107178|gb|FL251311.1|FL251311
genomic: GTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|24769505|gb|CA404634.1|CA404634
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|78023788|gb|DV492175.1|DV492175
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|18169973|gb|BM339813.1|BM339813
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: TCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|18165355|gb|BM335194.1|BM335194
genomic: TCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTEST: gi|32912106|gb|CF016918.1|CF016918
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
EST: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCC CTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
genomic: AAACTGGATTTACCGTTATTTCACGGAGGGTCATCACAGCAGATGGATCCgtaagttgtc ... tttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACT
tttatcccaaatgttttctcagaactgctgtccactaatggtctatttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG
cactaat putative branch site (score: 4)
tctatttctttc putative PPT
aaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtcacttttgtatggtatagtgttttatcccaaatgttttctcagaactgctgtccactaatggtctatttctttcagCTTGGCTTGCTGGTTTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT