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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctaatgttctttccttgcatggacacatatttttttccgtagtgctaatttaatgccctatcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC

Basic information

species Zea mays
transcript GRMZM2G407044_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075260|gb|EE163764.2|EE163764
EST:     AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA                         ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
EST: gi|149087824|gb|EE177122.2|EE177122
EST:     AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA                         ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
EST: gi|33098451|gb|CF058411.1|CF058411
EST:     AGAGGAGTCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA                         ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
EST: gi|78122764|gb|DV541148.1|DV541148
EST:     AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCGGGACAGGAAAA                         ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
EST: gi|71435773|gb|DR816823.1|DR816823
EST:     AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA                         ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
EST: gi|148949305|gb|EC894756.2|EC894756
EST:     AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA                         ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatggacacatatttttttccgtagtgctaatttaatgccctatcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC
                                       tgccctatcttctt  CT-rich tract
        acacatattttttt  TA-rich tract