1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatttctaatgttctttccttgcatggacacatatttttttccgtagtgctaatttaatgccctatcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGCCGAAAAATCCAC
species | Zea mays |
transcript | GRMZM2G407044_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGGAGTCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTEST: gi|149075260|gb|EE163764.2|EE163764
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTT
EST: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTEST: gi|78122764|gb|DV541148.1|DV541148
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTT
EST: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCGGGACAGGAAAA ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTEST: gi|148949305|gb|EC894756.2|EC894756
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTT
EST: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTEST: gi|71435773|gb|DR816823.1|DR816823
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTT
EST: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTEST: gi|149087824|gb|EE177122.2|EE177122
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTT
EST: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC-GTTTCTGGCGATTT
genomic: AGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAAgtaatttcta ... atcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTT
ttgcatggacacatatttttttccgtagtgctaatttaatgccctatcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGCCGAAAAATCCAC
tgccctatcttctt CT-rich tract
acacatattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttctaatgttctttccttgcatggacacatatttttttccgtagtgctaatttaatgccctatcttcttagATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCCGTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGCCGAAAAATCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT