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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgaactcacacgcacgcacacgcatccgcctgctgcttgtgtataaagtataaaccttttcttgtcctctgcttgttccccatgcaaacgtttgcagGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCA

Basic information

species Zea mays
transcript GRMZM2G399072_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472765|gb|EB701723.1|EB701723
EST:     GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG                         GCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAA
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... acgtttgcagGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAA
EST: gi|78081130|gb|DV509542.1|DV509542
EST:     GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG                         GCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAA
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... acgtttgcagGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagtataaaccttttcttgtcctctgcttgttccccatgcaaacgtttgcagGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCA
      tataaa  TA-rich tract