1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgttcacatgcatccaaaactgtatcaaaaacatctgcccaacgcggcaacgccggccgcttacgaaagttgttgctgccaaatttatattcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
species | Zea mays |
transcript | GRMZM2G399072_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG GAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAGEST: gi|78075185|gb|DV503619.1|DV503619
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... attcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
EST: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG GAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAGEST: gi|33467735|gb|CF244784.1|CF244784
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... attcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
EST: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG GAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAGEST: gi|148974703|gb|EE025512.2|EE025512
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... attcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
EST: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG GAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... attcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
gcggcaacgccggccgcttacgaaagttgttgctgccaaatttatattcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
cgcttac putative branch site (score: 2)
tattcct putative PPT
aaatttatattcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttcacatgcatccaaaactgtatcaaaaacatctgcccaacgcggcaacgccggccgcttacgaaagttgttgctgccaaatttatattcctgcagGAACAGCAGCGGCTTCTCGAGGGGAGCATCCATGTACAGAGGAGTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - tgcatcc
- - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - - - cgcggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggccgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg