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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaatttatgggacagttgtaaaccctcttacatgtatttagttccccatttgattttgatccaactgtgcataatcttggatatgctctctgaagGTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAG

Basic information

species Zea mays
transcript GRMZM2G398795_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G398795_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 3
gtacaaatttatgggacagttgtaaaccctcttacatgtatttagttccccatttgattt-tgatccaactgtgcataat---cttgga--tatgctctctgaagGTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAG-----------------------------
                                ||||| | | | | ||| || ||| ||| ||    || ||||||||||   |||| |  | | || ||||||||||||||||||||  ||||||||||| || ||||  || ||| |                             
-------------------------------gtacatttttctggctccacacttgctttctgtgataattgtgcataataatcttgaaatttttctttctgaagGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccccatttgattttgatccaactgtgcataatcttggatatgctctctgaagGTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAG
             ttttgat  putative branch site (score: 4)
                                           tgctctct  putative PPT
       atttgatttt  TA-rich tract