1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtatttgtttctcaggttgcatagttagttcggttttaattattaaatgtaacatggaaattaaatgtttctatggaatcacagGGATCTGTCAAATAACAATTTGTCTGGAGAAGTTCCATCAACTGGTTCCTTTTCGTTATTCACCCCTATCAG
species | Zea mays |
transcript | GRMZM2G384439_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTGGTTCAATTC-AAAATCGTTAACTGCTATCACTGCACTCCAAGTCCT GGATCTGTCAAATAACAATTTGTCEST: gi|71448255|gb|DR829305.1|DR829305
genomic: TCTGGTTCAATTCCAAAATCGTTAACTGCTATCACTGCACTCCAAGTCCTgtaagtattt ... ggaatcacagGGATCTGTCAAATAACAATTTGTC
EST: TCTGGTTCAATTCCAAAATCGTTAACTGCTATCACTGCACTCCCAGTCCT GGATCTGTCAAATAACAATTTGTCT
genomic: TCTGGTTCAATTCCAAAATCGTTAACTGCTATCACTGCACTCCAAGTCCTgtaagtattt ... ggaatcacagGGATCTGTCAAATAACAATTTGTCT
tcggttttaattattaaatgtaacatggaaattaaatgtttctatggaatcacagGGATCTGTCAAATAACAATTTGTCTGGAGAAGTTCCATCAACTGGTTCCTTTTCGTTATTCACCCCTATCAG
atgtaac putative branch site (score: 3)
tttaattattaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttgtttctcaggttgcatagttagttcggttttaattattaaatgtaacatggaaattaaatgtttctatggaatcacagGGATCTGTCAAATAACAATTTGTCTGGAGAAGTTCCATCAACTGGTTCCTTTTCGTTATTCACCCCTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT