1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggtgtttctacttgttcaggataattatacaagcggtgaactcaggcccaatttaactccatctaatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG
species | Zea mays |
transcript | GRMZM2G381051_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGEST: gi|148928298|gb|EE284912.2|EE284912
genomic: GGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
EST: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGEST: gi|211288131|gb|FL391420.1|FL391420
genomic: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
EST: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGEST: gi|148949902|gb|EC895400.2|EC895400
genomic: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
EST: GCATGAGAGGAAGCGAACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGEST: gi|31352282|gb|CD436639.1|CD436639
genomic: GCATGAGAGGAAGCG-ACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCG
EST: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGEST: gi|60356707|gb|DN223680.1|DN223680
genomic: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
EST: AGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGEST: gi|40333885|gb|CK367955.1|CK367955
genomic: AGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
EST: TTCAGTACTGCTCATAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGEST: gi|37394249|gb|CF634396.1|CF634396
genomic: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
EST: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACAC GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
genomic: TTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtt ... taatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGG
ggataattatacaagcggtgaactcaggcccaatttaactccatctaatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG
atctaat putative branch site (score: 89)
ctccatct CT-rich tract
attatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgtttctacttgttcaggataattatacaagcggtgaactcaggcccaatttaactccatctaatctgcagGTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG