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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG

Basic information

species Zea mays
transcript GRMZM2G376619_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 4
gtaatatatccatatccaaccatgtttcagttt-gcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgc-attgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
            ||      |  ||   | ||  || ||  ||      | |||| |  ||  || || | | ||||  |  ||   ||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||| |||  || || || ||||||||||| |||||||| || |||  |||                                                                                     
-----------gtaagtggtcgagtgataattaagcatatact------tagatcaatagtcaattggttaataaactgctctgctgcagAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAAC-------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA06G14050.1 (Glycine max), 3'ss of exon 6
gtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgc-attgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
||||  |  |     ||||  |||||   | |    | || |   || |  ||  |   || |  |  | ||     |        |||| ||||||||||||||| |||  ||||| || ||| ||||||||||||| ||  | |  || ||||| ||||||||||| ||||||||||||||   |||                                                                                     
gtaacgttgctg---ccaa--atgtt---gctcatatgctgtaattatt--attgatatttcactgtattaagggtgttatgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAAC-------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA04G40760.1 (Glycine max), 3'ss of exon 6
gtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgc-attgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
|||| ||  |||   ||||   | |   | ||||  || |   ||| || ||  |    ||    |  | || |   | |   |  |||| ||||||||||||||| |||| ||||| |||||| ||||||||||||| ||  | |  || ||||| || |||||||| ||||| || || ||   |||                                                                                     
gtaacatgacca---ccaaatgtttgcaactttg--taat---tgttattgacat----ttctctgtattaacagtgttgtgcttgcagATGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTACTACCTTCGAAAACTGCTATTGCCCCTGTTAATCCAAC-------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA02G35640.1 (Glycine max), 3'ss of exon 5
gtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgc-attgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
|||| ||  ||      |   |||  ||  | || ||| |           ||  ||  || |  |  | || |   | |       ||| ||||||||||||||| |||| ||||| |||||| ||||||||||||| ||  | |  || ||||| ||||||||||| ||||  || || ||   |||                                                                                     
gtaacatgaccgc-caaatgtatgcatctttgtgattatt-----------attaacatttcactgtattaacagtgttgtgcctgtagAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAAC-------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA04G40750.1 (Glycine max), 3'ss of exon 5
gtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgc-attgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
|||| ||  |     ||||   |   ||| | ||||||   | | || |||   | |  |||||     |    |   | |     |||| ||||||||||||||| |||  ||||| || ||| ||||||||||||| ||  | |  || ||||| ||||||||||| |||||||| |||||   |||                                                                                     
gtaacattgctg---ccaaatgttgctca-tatgcttaaattat-tattggtatttcactttattaacggtgttatgccta-----cagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAAC-------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA06G14030.2 (Glycine max), 3'ss of exon 6
gtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgc-attgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
|||| ||  ||      |   |||  ||  | || ||| |           ||  ||  || |  |  | || |   | |      |||| ||||||||||||||| |||| ||||| |||||| ||||||||||||| ||  | |  || ||||| ||||||||||| ||||| || || ||   |||                                                                                     
gtaacatgaccgc-caaatgtatgcatctttgtgattatt-----------attaacatttcactgtattaacagtgttgtgcctgcagAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAAC-------------------------------------------------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccagTCAACGAAACATTCCTACCCAGGGTATGCAAACCTTCCGGAACCAACATGCTTGTCTTAAGTTCATGGCTCAATGTTCATGCTCTATCTGATATG
         atattat  TA-rich tract