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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatactagtgtctctatgtttttttgtcccaaaaaagccagatgattctataatttaaataatgtatccctatgttccttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCTTTCTGACTTCGGTTTGTGTAAACCTTTGGACAGCAGTAATTTCCCTAAT

Basic information

species Zea mays
transcript GRMZM2G375904_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G375904_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g43570.3 (Oryza sativa), 3'ss of exon 5
gtaccatactagtgtctctatgtttttttgtcccaaaaaagccagatgattctataatttaaataatgtatccctatgttccttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCTTTCTGACTTCGGTTTGTGTAAACCTTTGGACAGCAGTAATTTCCCTAAT
||| || |  |||||  | | |||||  |      || ||    |||||||| |          ||  || || |    |  |||| ||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| || |||
gtatcaaataagtgttcccaagttttggt------aagaaatttgatgattcca----------aagataaccttggtgtttttttttcagGGATATCAAACCAGACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAACCTTTGGATAGCAGTAATTTTCCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213171755|gb|FM196253.1|FM196253
EST:     GAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCG                         GGATATCAAACCAGATAATCTTTTGTTAGATCGCAGTGGTCACCTGAAGCT
genomic: GAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCGgtaccatact ... cttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCT
EST: gi|211127917|gb|FL461340.1|FL461340
EST:     GAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCG                         GGATATCAAACCAGATAATCTTTTGTTAGATCGCAGTGGTCACCTGAAGTT
genomic: GAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCGgtaccatact ... cttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCT
EST: gi|67018726|gb|CO447475.1|CO447475
EST:     GAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCG                         GGATATCAAACCAGATAATCTTTTGTTAGATCGCAGTGGTCACCTGAAGCT
genomic: GAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCGgtaccatact ... cttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagccagatgattctataatttaaataatgtatccctatgttccttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCTTTCTGACTTCGGTTTGTGTAAACCTTTGGACAGCAGTAATTTCCCTAAT
                                  tccctatgttcctttt  CT-rich tract
       agatgattctataatt  TA-rich tract