1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...gtcaccttgagagaaccaagtaaacttcatatgctgtaatctatgtttgtctctgtatgatggatagcgaattggtttaacttcctttttattcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGGTACTCTCTTCCATAAGGATGCAAGTCTGTGGGAGCCATCCAAGGATGTT
species | Zea mays |
transcript | GRMZM2G375504_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAG TGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGGEST: gi|67032674|gb|CO461423.1|CO461423
genomic: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAGgtatgtattg ... attcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGG
EST: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAG TGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGGEST: gi|211356649|gb|FL094995.1|FL094995
genomic: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAGgtatgtattg ... attcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGG
EST: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAG TGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGGEST: gi|32934967|gb|CF039779.1|CF039779
genomic: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAGgtatgtattg ... attcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGG
EST: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAG TGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGG
genomic: AAGGCTGCTTTTGTGGCTTCGAACAGTGGCACACCTGTTGTTATTACAAGgtatgtattg ... attcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGG
tttgtctctgtatgatggatagcgaattggtttaacttcctttttattcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGGTACTCTCTTCCATAAGGATGCAAGTCTGTGGGAGCCATCCAAGGATGTT
gtttaac putative branch site (score: 3)
tttaacttccttttta CT-rich tract
tttttattcttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaccttgagagaaccaagtaaacttcatatgctgtaatctatgtttgtctctgtatgatggatagcgaattggtttaacttcctttttattcttgaagTGGATTTGCATCTCAGAGCATTGTTAGAGTTCTCCAAGGAGAGAAGATTGGTACTCTCTTCCATAAGGATGCAAGTCTGTGGGAGCCATCCAAGGATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG