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...gtacatcctcttatcagttatcacattatcatatgttatggatttgcttcagtcaattccagaaaatgaatacattgttttgatatgttttaatgttcatTTCAGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCTTATTTACTTGCGAAGGATCTGATTTTGCAA
species | Zea mays |
transcript | GRMZM2G370852_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTC T-CAAGGTGCCACCTACTATCACGTTTGTATTAGATGGAGAAATGCCGCCTEST: gi|32840108|gb|CD979789.1|CD979789
genomic: AATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTCtcaaggtacg ... taatgttcatTTCA-GGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCT
EST: AATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTC -TCAAGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCTEST: gi|32846022|gb|CD985703.1|CD985703
genomic: AATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTCtcaaggtacg ... taatgttcatTTC-AGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCT
EST: AATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTC -TCAAGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCT
genomic: AATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTCtcaaggtacg ... taatgttcatTTC-AGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCT
gcttcagtcaattccagaaaatgaatacattgttttgatatgttttaatgttcatTTCAGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCTTATTTACTTGCGAAGGATCTGATTTTGCAA
ttttaat putative branch site (score: 137)
attgttttgatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatcctcttatcagttatcacattatcatatgttatggatttgcttcagtcaattccagaaaatgaatacattgttttgatatgttttaatgttcatTTCAGGTGCCACCTACTATCAGGTTTGTATTAGATGGAGAAATGCCGCCTTATTTACTTGCGAAGGATCTGATTTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -catcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg