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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgcacacatctgtccactttaattctttttagatgaatgccttttaaactcaatgcaatctgtcatttgcacttttagGAGTTGAAATTGTCATTGCAACTCCTGGCCGGTTGATTGATATGCTGGAAGCTGGTCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGC

Basic information

species Zea mays
transcript GRMZM2G362850_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G362850_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g68320.3 (Oryza sativa), 3'ss of exon 4
gtacctgcacacatctgtccactttaattctttttagatgaatgccttttaaactcaatgcaatctgtcatttgcacttttagGAGTTGAAATTGTCATTGCAACTCCTGGCCGGTTGATTGATATGCTGGAAGCTGGTCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGC
|||  ||  | |||||    ||   || |  |||| ||   | |  |||  |    ||     ||| |    |  ||||  ||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| ||||| || ||||| |||||||| ||  ||||||||||
gtatttgtcc-catct---taccgaaaataattttggacataaggttttgtaggctaa----gtctcttgcgtctacttccagGGGTTGAGATTGTCATTGCAACACCTGGTCGGTTGATCGATATGCTGGAAGGTGGTCACACTAACCTGCGAAGAGTAACATACCTCGTCCTGGATGAGGC

upper sequence: GRMZM2G362850_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 3'ss of exon 4
gtacctgcacacatc---tgtccactt--taattctttttagatgaatgccttttaaactcaatgcaatctgtcatttgcacttttagGAGTTGAAATTGTCATTGCAACTCCTGGCCGGTTGATTGATATGCTGGAAGCTGGTCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGC
|||| |       |    || | | ||  ||| ||  | || ||  | |    |  |    |||   |||| |       | |  |||| ||||| ||||||||||| || ||||| || || || ||||||||||| |||   || |||||||| || |||||||| |||||||| || ||||||||
gtacttatgtttcttctatggctatttgctaaatccctataaatttaggttggtgcacgaaaatcttatctattgccctta-tgctagGTGTTGAGATTGTCATTGCTACACCTGGACGATTAATAGATATGCTGGAGGCTCAACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttagatgaatgccttttaaactcaatgcaatctgtcatttgcacttttagGAGTTGAAATTGTCATTGCAACTCCTGGCCGGTTGATTGATATGCTGGAAGCTGGTCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGC
                                              cactttt  CT-rich tract
                  ttttaaact  TA-rich tract