1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagcttcttgaaatttttactcaatggtgctgccagccttttcattttcctggctttaattagtgacatgtcatttttgtttacagAGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGTTTTAGATGTGGAGAGCTTGAACCATCCCATGGGCCAAATGCTAAG
species | Zea mays |
transcript | GRMZM2G362718_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGAATCTAAATGTGAAAGTCTTCATTACACTTCAGCAGAAGTAAAG AGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGTEST: gi|211261063|gb|FL477005.1|FL477005
genomic: GCAGAGAATCTAAATGTGAAAGTCTTCATTACACTTCAGCAGAAGTAAAGgtagcttctt ... ttgtttacagAGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGT
EST: GCAGAGAATCTAAATGTGAAAGTCTTCATTACACTTCAGCAGAAGTAAAG AGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGTEST: gi|78543626|gb|DV621124.1|DV621124
genomic: GCAGAGAATCTAAATGTGAAAGTCTTCATTACACTTCAGCAGAAGTAAAGgtagcttctt ... ttgtttacagAGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGT
EST: GCAGAGAATCTAAATGTGAAAGTCTTCATTACACTTCAGCAGAAGTAAAG AGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGT
genomic: GCAGAGAATCTAAATGTGAAAGTCTTCATTACACTTCAGCAGAAGTAAAGgtagcttctt ... ttgtttacagAGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGT
gccagccttttcattttcctggctttaattagtgacatgtcatttttgtttacagAGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGTTTTAGATGTGGAGAGCTTGAACCATCCCATGGGCCAAATGCTAAG
ctttaat putative branch site (score: 4)
tttttgttt putative PPT
atttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcttcttgaaatttttactcaatggtgctgccagccttttcattttcctggctttaattagtgacatgtcatttttgtttacagAGAATTGGTACTTATCTATGTGCAAACTGCAAAAATAAGCAACACCAATGTTTTAGATGTGGAGAGCTTGAACCATCCCATGGGCCAAATGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT