Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataattcttttggaaatacataagagtatataaaatgtataattgaagcataaagaatgcttattagggaaattattttcaaaatattatttcgttcagttcatattatagtgtttaacatacttattatcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG

Basic information

species Zea mays
transcript GRMZM2G361693_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361693_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 3'ss of exon 5
gtacataattcttttggaaatacataagagtatataaaatgtataattgaagcataaag--aatgcttattagggaaattattttcaaaatattatttcgttcagttcatattatagtgtttaacatacttattatctt--ctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG
            |      |||  | | | ||| |  ||||| ||| ||| | |||| |  | |  | | ||| ||    ||||   |  || |  |   |||  |   ||||||  || || |   |||| || | ||  ||||| | ||||||||||||||||| ||| |||| ||||| || ||||| |||||||||
---------gtatcatatcatatgtcaaa-tatgtttaatgtttaagtgatgtataatgacagtcgtgactagagatgcaatttc--atttagtggtatattc--tctgtattattatgattcattaacttgttcttttgtctcagGACATGGAGAAAGAAATCAGAAAAGAAGTCGATGATGCCATTGCGAAAGCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075088|gb|DV503522.1|DV503522
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|33096109|gb|CF056103.1|CF056103
EST:     GCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: GCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|76285908|gb|DV025476.1|DV025476
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|71430300|gb|DR811350.1|DR811350
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|91867561|gb|EB399727.1|EB399727
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|76925282|gb|DV170361.1|DV170361
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|50330864|gb|CO525990.1|CO525990
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|60399155|gb|DN231969.1|DN231969
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|22819342|gb|BU499432.1|BU499432
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|149101857|gb|EE187940.2|EE187940
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAACCAAGTAGATGGCGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|86471503|gb|DY237873.1|DY237873
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|5670884|gb|AI932147.1|AI932147
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|60348121|gb|DN215094.1|DN215094
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|26558514|gb|CA830749.1|CA830749
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|40336728|gb|CK370798.1|CK370798
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAATCAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|67014771|gb|CO443520.1|CO443520
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|6993969|gb|AW453183.1|AW453183
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|89763316|gb|DY690567.1|DY690567
EST:     TTAGAAAGTTGCTTTTGACTCATGCCCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGTTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|76021451|gb|DT948621.1|DT948621
EST:     TTAGAAAGTTGCTTTTGACTCATGCCCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGGCGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|5847216|gb|AW000295.1|AW000295
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|74233521|gb|DT641435.1|DT641435
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|50332698|gb|CO527824.1|CO527824
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|71770429|gb|DR968366.1|DR968366
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|37395082|gb|CF634820.1|CF634820
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAATCAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|50335332|gb|CO530458.1|CO530458
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|71432517|gb|DR813567.1|DR813567
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|22472806|gb|BU037286.1|BU037286
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|5847105|gb|AW000184.1|AW000184
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|5108256|gb|AI739969.1|AI739969
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|71756697|gb|DR954634.1|DR954634
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|17921802|gb|BM259453.1|BM259453
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|6020670|gb|AW065703.1|AW065703
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|87156670|gb|DY401459.1|DY401459
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCCGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|31356997|gb|CD441354.1|CD441354
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|31362510|gb|CD446867.1|CD446867
EST:     CTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: CTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|31356922|gb|CD441279.1|CD441279
EST:     CTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: CTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|111193578|gb|EE291714.1|EE291714
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGGCGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|78092533|gb|DV520907.1|DV520907
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|17921476|gb|BM259127.1|BM259127
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|24768276|gb|CA403405.1|CA403405
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|74235161|gb|DT643075.1|DT643075
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|71419909|gb|DR804937.1|DR804937
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|31361786|gb|CD446143.1|CD446143
EST:     ATGCTGCTGAGCTCAAG                         AATATGCAGCCCTAAATGAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: ATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|89252578|gb|DY624364.1|DY624364
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|78123323|gb|DV541707.1|DV541707
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|71323252|gb|DR798280.1|DR798280
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|5325121|gb|AI783312.1|AI783312
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTG-CAAATGCTG-TGA-CTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAG
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAG
EST: gi|71312003|gb|DR792517.1|DR792517
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|84351245|gb|DW245650.1|DW245650
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|88748419|gb|DY532560.1|DY532560
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|33467100|gb|CF244149.1|CF244149
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|149005248|gb|EE039795.2|EE039795
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGTTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|22490952|gb|BU050875.1|BU050875
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|76018760|gb|DT945930.1|DT945930
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|50322896|gb|CO518022.1|CO518022
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|78076521|gb|DV504955.1|DV504955
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGTTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
EST: gi|94474454|gb|EB703412.1|EB703412
EST:     TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG                         AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA
genomic: TTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 207

GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 216

GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 289

GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 323

GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAGgtacataatt ... atcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattatttcgttcagttcatattatagtgtttaacatacttattatcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG
                             gtttaac  putative branch site (score: 323)
                                       cttattatcttctc  putative PPT
                   atattatagtgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacataattcttttggaaatacataagagtatataaaatgtataattgaagcataaagaatgcttattagggaaattattttcaaaatattatttcgttcagttcatattatagtgtttaacatacttattatcttctcagAATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG