1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcaacctttacacagtgttcatgttatagggttctgttgctagttgctataatgtgctaaaatctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAAGTGTGTCTCAGCATCCATGGCATTGTCACAGTGGATTCAGCAATG
species | Zea mays |
transcript | GRMZM2G361605_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACG ATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAAEST: gi|67041181|gb|CO467436.1|CO467436
genomic: ATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacc ... atctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA
EST: TGTGGGTACAGGCGACTCGNCAA-TTCC-CAAAAGATA-GCACTTACACG ATTGGCCCTTTCCEST: gi|211418421|gb|FL279572.1|FL279572
genomic: TGTGGGTACAGGCGACTCG-CAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacc ... atctatgtagATTGGCCCTTTCC
EST: ATGTGSGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACG ATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA
genomic: ATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacc ... atctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA
gttcatgttatagggttctgttgctagttgctataatgtgctaaaatctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAAGTGTGTCTCAGCATCCATGGCATTGTCACAGTGGATTCAGCAATG
tgctaaa putative branch site (score: 2)
taaaatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaacctttacacagtgttcatgttatagggttctgttgctagttgctataatgtgctaaaatctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAAGTGTGTCTCAGCATCCATGGCATTGTCACAGTGGATTCAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA