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gttagtatttagaatgtctcgatgtcatatacttctggttgcagcatggcaattgacaactgtctgtatattgcaatcctcaaagtaagtcatatatttcgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAGCTCAAGACCCTAGGGAATAGCGTGAGCATTTTTCACCTGGTGGATTACC
species | Zea mays |
transcript | GRMZM2G359397_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAGEST: gi|67017472|gb|CO446221.1|CO446221
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
EST: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAGEST: gi|78119881|gb|DV538265.1|DV538265
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
EST: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAGEST: gi|78119880|gb|DV538264.1|DV538264
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
EST: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
gacaactgtctgtatattgcaatcctcaaagtaagtcatatatttcgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAGCTCAAGACCCTAGGGAATAGCGTGAGCATTTTTCACCTGGTGGATTACC
aattgac putative branch site (score: 3)
tttcgttc putative PPT
taagtcatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatttagaatgtctcgatgtcatatacttctggttgcagcatggcaattgacaactgtctgtatattgcaatcctcaaagtaagtcatatatttcgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAGCTCAAGACCCTAGGGAATAGCGTGAGCATTTTTCACCTGGTGGATTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA