1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagtgccccctcccccccaaaaaaaaaaatacttaacactgtactgatagatatacggcatgatttgattaacatttttgtcatcttccgtgtcatagGTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGACTGTTTGCCGCAAAGGATTGATCAAGAGAGCTTCTTAATAGCCATGTATG
species | Zea mays |
transcript | GRMZM2G359397_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGTTCCTGATACTGTTTCAGCTTCTTCTAGTGCCATCTTGATTAAT GTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGACEST: gi|31353662|gb|CD438019.1|CD438019
genomic: ATGGTGTTCCTGATACTGTTTCAGCTTCTTCTAGTGCCATCTTGATTAATgtcagtgccc ... cgtgtcatagGTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGAC
EST: ATGGTGTTCCTGATACTGTTTCAGCTTCTTCTAGTGCCATCTTGATTAAT GTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGACEST: gi|76282140|gb|DV021708.1|DV021708
genomic: ATGGTGTTCCTGATACTGTTTCAGCTTCTTCTAGTGCCATCTTGATTAATgtcagtgccc ... cgtgtcatagGTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGAC
EST: ATGGTGTTCCTGATACTGTTTCAGCTTCTTCTAGTGCCATCTTGATTAAT GTGACCCCA-TTGGCTACTGGCATGTGCTATTGACT
genomic: ATGGTGTTCCTGATACTGTTTCAGCTTCTTCTAGTGCCATCTTGATTAATgtcagtgccc ... cgtgtcatagGTGAGCCCAATTGGCTACTGCCATGTGCTATTGACT
ctgatagatatacggcatgatttgattaacatttttgtcatcttccgtgtcatagGTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGACTGTTTGCCGCAAAGGATTGATCAAGAGAGCTTCTTAATAGCCATGTATG
gattaac putative branch site (score: 6)
tttttgtcatcttcc CT-rich tract
atttgattaacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgccccctcccccccaaaaaaaaaaatacttaacactgtactgatagatatacggcatgatttgattaacatttttgtcatcttccgtgtcatagGTGAGCCCAATTGGCTACTGCCATGTGCTATTGACTCCCAAGATCCAGGACTGTTTGCCGCAAAGGATTGATCAAGAGAGCTTCTTAATAGCCATGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT