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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacagACACTTGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTG

Basic information

species Zea mays
transcript GRMZM2G352837_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 18
gtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttgga-----cagACACTTGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTG
||| |  |     |||  |    |  |   | | ||| |||||  |     ||   ||||   | | |     ||| | ||||||||||||||||| ||  | |||||||| |||||| | || || ||||||||||||||||| || |||||  | |  |||||||||||  |||
gttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatggtatatttcagGCTCTTGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTG

upper sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 18
gtttgtcgacttcagttat---tttcagatatcttttttttaatgttttgcccattaacaactt--ccttggacagACACTTGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTG
|||| |  ||||||  | |   | |  | |  ||      |  |    |  | ||| |  || |     |   ||| ||||||| ||||||||||| ||  | ||| |||| ||||||||||| |||||||| |||||||| ||||| ||||| || || || ||||||||  |||
gtttttatacttcaactgtgtttcttggttcactaggaggttgtaaacttgctattgaatacgtggttctcttcagGCACTTGTAGAGTTCTTTGGTACGCTTTCACGAGAATGGGCTTTGGAGTGCATGAAGGACCTTCTTCTGGTCAATCTAAGAGGCAACCTTCAGATAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcagatatcttttttttaatgttttgcccattaacaacttccttggacagACACTTGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTG
                                 cattaac  putative branch site (score: 2)
                                          cttcctt  putative PPT
       agatatctttttttta  TA-rich tract