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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctattactcgtttctagtctcttggattcaaacacctccattctttcctttgaattatatattatcaattgtgctgaagtttctttcatggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCCCCTTGAACCTCCGCCAGCGTCTGCCGCTGTAGTCCTTGATACCCCTGAT

Basic information

species Zea mays
transcript GRMZM2G348866_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348866_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g05650.1 (Oryza sativa), 3'ss of exon 5
gtctattactcgtttctagtctcttggattcaaacacctccattctttcctttgaattatatattatcaattgtgctgaagtttctttcatggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCCCCTTGAACCTCCGCCAGCGTCTGCCGCTGTAGTCCTTGATACCCCTGAT
     ||  || | |  |  ||  || ||  ||||   |  | | | | |   || ||            ||  ||| |  |    |   |||| |||||||||| |||||| |||||||||| ||||||||||| || ||||| || |||||||||||| |||||||| |  || || ||||   |||| | ||||||
----gtttttcatctgca--cttctgaatggaaactagtaaaatatgtacaaagatttgc----------ttaagctaagttcgtctagttggcaacagTGAGTTCGAGGAATTGGAGGCTGTGCCTACATCTGCAGCCATAGATGGTCCCCTTGAACCTTCGCCAGCGACCACCACTATAGTTTCTGATGCTCCTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969459|gb|EE020269.2|EE020269
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|76021487|gb|DT948657.1|DT948657
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|76932642|gb|DV173100.1|DV173100
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|76915823|gb|DV166138.1|DV166138
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|50334180|gb|CO529306.1|CO529306
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|86468761|gb|DY235131.1|DY235131
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         AGAGTTAGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|101402261|gb|EB822718.1|EB822718
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|78073578|gb|DV502012.1|DV502012
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|76286853|gb|DV026421.1|DV026421
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|78119406|gb|DV537790.1|DV537790
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|211286797|gb|FL325896.1|FL325896
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|211497313|gb|FL084183.1|FL084183
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|71444517|gb|DR825567.1|DR825567
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|101396950|gb|EB820400.1|EB820400
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|71449627|gb|DR830677.1|DR830677
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
EST: gi|71447776|gb|DR828826.1|DR828826
EST:     AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAG                         TGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC
genomic: AATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACAAAAAGgtctattact ... atggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcctttgaattatatattatcaattgtgctgaagtttctttcatggccacagTGAGTTTGAGGAACTGGAGGCTGTTCCTACATCTGCTGCTATAGACGGCCCCCTTGAACCTCCGCCAGCGTCTGCCGCTGTAGTCCTTGATACCCCTGAT
                                     tttctttcat  CT-rich tract
      tttgaattatatatta  TA-rich tract