1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcttatttcaaacagtcccactttaacttatcatttctttagctgtaggattctcttttcttagtgaacacttggtttatggcttttccagatgcgtataatcatctcttgcttattgttgaccgttctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAACAATATGGAATGCAGAGGAAACACCTGAACATTCTTTGCTGGAACAAA
species | Zea mays |
transcript | GRMZM2G344476_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|148956464|gb|EC902291.2|EC902291
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|74238643|gb|DT646557.1|DT646557
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|211119071|gb|FL021982.1|FL021982
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|149104205|gb|EE289638.2|EE289638
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|148936448|gb|EC880552.2|EC880552
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|149112589|gb|EE191373.2|EE191373
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|91872284|gb|EB402241.1|EB402241
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|50331303|gb|CO526429.1|CO526429
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|148958992|gb|EE010517.2|EE010517
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|148944150|gb|EC889238.2|EC889238
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|4730512|gb|AI649678.1|AI649678
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|71315960|gb|DR794668.1|DR794668
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAEST: gi|91875931|gb|EB405888.1|EB405888
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
EST: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAG CTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
genomic: GAACTAATAGTTCTGTTCATCAAGTCAATGTTGTTGCACTATCAAAGgtgcttattt ... tctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAA
gcttttccagatgcgtataatcatctcttgcttattgttgaccgttctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAACAATATGGAATGCAGAGGAAACACCTGAACATTCTTTGCTGGAACAAA
tgttgac putative branch site (score: 81)
ccgttct CT-rich tract
tataatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttatttcaaacagtcccactttaacttatcatttctttagctgtaggattctcttttcttagtgaacacttggtttatggcttttccagatgcgtataatcatctcttgcttattgttgaccgttctattacagCTGACCTGCTTCATATTGCCCAATCAATATGGACATTTGTTACAACCAAAAACAATATGGAATGCAGAGGAAACACCTGAACATTCTTTGCTGGAACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
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