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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacggagaattttatcatctgattttctctcattctctctgattaagctttttctggtctataatttttgtgtatctggttgcaccactgccttctgtagGGTTTGTGCTGGATGCAGAAGTCCAATTGGCCGCGGTCGGTTTCTCAGTTGTATGGACTCTGTTTGGCATCCCGAGTGCTTCAGGTGTTATGCTTGTGAT

Basic information

species Zea mays
transcript GRMZM2G342105_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342105_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g42820.2 (Oryza sativa), 3'ss of exon 6
---------gacggagaattttatcatctgattttctctcattctctctgattaagctttttctggtctataatttttgtgtatctggttgcaccactgccttctgtagGGTTTGTGCTGGATGCAGAAGTCCAATTGGCCGCGGTCGGTTTCTCAGTTGTATGGACTCTGTTTGGCATCCCGAGTGCTTCAGGTGTTATGCTTGTGAT
         | | |      ||    ||| |   | |   | |   |  | |  | |  ||   | ||| | ||| |  |||| |   |||    || |     |||||||||||||||||||| | || |||||| || |  || |||||||| ||||| ||||| ||||||||||| ||| ||||||||||||||| ||||||||||
cttcttcatgtctgttctacttgggttctcaccctgttctagtgcatgcggtggaacccttagggttctctgattctcatgtaccacattg----acgg-----tgtagGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttttctggtctataatttttgtgtatctggttgcaccactgccttctgtagGGTTTGTGCTGGATGCAGAAGTCCAATTGGCCGCGGTCGGTTTCTCAGTTGTATGGACTCTGTTTGGCATCCCGAGTGCTTCAGGTGTTATGCTTGTGAT
                                          ctgccttct  CT-rich tract
              tataatttttgtgtat  TA-rich tract