1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttaaaatgcctctgttctgttttcagtcccttgaggacattctttgttgtcgacttgcttttttttaaactgtagtcttcactgtcattctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGAATGAGAAGTTCAACAAAGATGAAGTATGGGGCCATCTTGGTAAAAGAA
species | Zea mays |
transcript | GRMZM2G341027_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATATGTCCGATACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|60400104|gb|DN232911.1|DN232911
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|32823108|gb|CD962830.1|CD962830
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|71758214|gb|DR956151.1|DR956151
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|89759798|gb|DY688500.1|DY688500
genomic: CAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|78122711|gb|DV541095.1|DV541095
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|32929790|gb|CF034602.1|CF034602
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: ACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|67016342|gb|CO445091.1|CO445091
genomic: ACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGEST: gi|91055346|gb|EB165764.1|EB165764
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
EST: CATATGTCCGGTCCAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGG CAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
genomic: CATATGTCCGGTACAACAGTAGAGGTCGCGGAAGAGGAAGAGGCCGTGGGgtatgctttt ... ctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATG
tgttgtcgacttgcttttttttaaactgtagtcttcactgtcattctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGAATGAGAAGTTCAACAAAGATGAAGTATGGGGCCATCTTGGTAAAAGAA
ctgtcattctctct CT-rich tract
ttttttttaaactgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaaatgcctctgttctgttttcagtcccttgaggacattctttgttgtcgacttgcttttttttaaactgtagtcttcactgtcattctctctacagCAATCGCATCCCATAACCAAGTTCACAGAGGACTTTGATTTCATGGCAATGAATGAGAAGTTCAACAAAGATGAAGTATGGGGCCATCTTGGTAAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - -aatgcct
- - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcactg