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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtaatcatgcatttagttcctttcttgtcactctgttaagcacttcggattttttttcttactgacgattttttataatattttctttcttcttcgcagATCAGAAGTCCAGCCAGCAGATGGGGTCTCATGCTGCATATCCTCCATGGGCAATGCATCCTGCATCTGGTGCAGTTCTTTACCCACCTTATCCTATGCA

Basic information

species Zea mays
transcript GRMZM2G340408_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340408_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g26440.1 (Oryza sativa), 3'ss of exon 8
tgtaatcatgcatttagttcctttcttgtcactctgttaagcacttcggattttttttc----ttactgacgattttttataatattttctttcttcttcgcagATCAGAAGTCCAGCCAGCAGATGGGGTCTCATGCTGCATATCCTCCATGGGCAATGCATCCTGCATCTGGTGCAGTTCTTTACCCACCTTATCCTATGCA
    |   | || | ||| | |    | | | | |     |   ||    ||| | |||    ||| ||  |  ||   | | |  ||| | ||| |||  |||| || |||||  | || |||||||||| ||| |||||||||||||||||||||||||||||| || ||       | |        |||||   |     
--gcactgtacact-agtacatcatctttgattttagcgtgtctttgttttttctcttcgagattattggag-cttacaagattgctttgtctctgctttacagAGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGGCAATGCATCCTCCACCTTACCATATGCAAGGAATGCCTTACTATCCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggattttttttcttactgacgattttttataatattttctttcttcttcgcagATCAGAAGTCCAGCCAGCAGATGGGGTCTCATGCTGCATATCCTCCATGGGCAATGCATCCTGCATCTGGTGCAGTTCTTTACCCACCTTATCCTATGCA
               tactgac  putative branch site (score: 1)
                        ttttttataatatttt  putative PPT
     ttttttttcttactga  TA-rich tract