1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggttgtgtagtatatatcttcaatctacttttagttaccttggttgtacactatatttttttggacatctgaaatcgtatattaatacgattctaagcagGATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTGCACTTGGTGCAGCACGCGCACTTGCATATTTGCATGAGGATTCAAGTCC
species | Zea mays |
transcript | GRMZM2G330298_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTTTATGAGCTTGTTCCGAATGGCAGTGTGGAATCTCACTTGCATG GATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTGEST: gi|18661380|gb|BM501382.1|BM501382
genomic: TTTGGTTTATGAGCTTGTTCCGAATGGCAGTGTGGAATCTCACTTGCATGgtaaatttcc ... ttctaagcagGATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTG
EST: TTTGGNTTATGAGCTTGTNCCGAATGGCAGTGTGGAATCTCACTTGCATG GATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTGEST: gi|5268951|gb|AI770915.1|AI770915
genomic: TTTGGTTTATGAGCTTGTTCCGAATGGCAGTGTGGAATCTCACTTGCATGgtaaatttcc ... ttctaagcagGATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTG
EST: GTTCCGAATGGCAGTGTGGAATCTCACTTGCATG GATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTG
genomic: GTTCCGAATGGCAGTGTGGAATCTCACTTGCATGgtaaatttcc ... ttctaagcagGATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTG
gtacactatatttttttggacatctgaaatcgtatattaatacgattctaagcagGATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTGCACTTGGTGCAGCACGCGCACTTGCATATTTGCATGAGGATTCAAGTCC
tattaat putative branch site (score: 40)
aaatcgtatattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgtgtagtatatatcttcaatctacttttagttaccttggttgtacactatatttttttggacatctgaaatcgtatattaatacgattctaagcagGATCAGATAAGGGAGCTGCTCAGTTTGATTGGAACGCTAGGCTCAAAATTGCACTTGGTGCAGCACGCGCACTTGCATATTTGCATGAGGATTCAAGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - -ttggttg