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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatattctgtaggtacacaaacttacatccactttatatgactttaacctgcaaaaggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG

Basic information

species Zea mays
transcript GRMZM2G328265_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 3'ss of exon 4
------------gtaaatattctgtaggtacacaaacttacatccactttatatgactttaacctgcaaaaggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
              |||| |  |||| |     || ||  |||   || |   | | ||||||||| ||||  ||  |||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| || |||| ||
gtaggtgttctacaaaatctgttgtaaggcttaaacctggcatttgctctggctaattttaacctggaaaactaa--cagGAAAGCTTGAAAGGAAAGCTGTCCTCAAAGCTATATGTGCTGGCTTTGAAGAAACTACCGAGCCAAATGTTTGTCTTAGTGATG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA01G45380.1 (Glycine max), 3'ss of exon 4
gtaaatattctgtaggtacacaa--acttacatccactttatatgactttaacctgcaaaaggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
||   || ||| |         |    |      |    | |   | | |||    || ||    | |||| ||  | ||||     ||||| || || ||||| ||| |||| |||||||||||||||||||||  ||||||| ||||  |||
gtttgtactctatgctcttgtgataggtagtgatctggatttccaattctaa---acagaatctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCAGTG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G40340.1 (Glycine max), 3'ss of exon 4
-----------gtaaatattctgtaggtacacaaacttacatccactttatatgactttaacctgcaaaaggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
            |   | |    ||||||   |     |  |||| ||  || |  || |   |          |||||| ||  | ||||     |||||  | |||||||| |||||||||||||| |||||||| ||||||  ||||||  ||||  |||
gtttgtactgtatgcttctctgataggtattgatctggatttccaattcttaagcattcattttttgt------tacagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACCGAACCAGCTGTTTGTTTGAGCAGTG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G27000.1 (Glycine max), 3'ss of exon 4
gtaaatattctgtaggtac---acaaacttacatccac-tttatatgactttaacctgcaaaaggaatac-agGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
||   || | |||   |     | | |  |  |||    |||  |   ||| | | | ||       | | ||| ||  | ||||     |||||  | |||||||| |||||||||||||| |||||||||||||||  ||||||  ||||  |||
gtttgtactgtgtgcttctctgatagatattgatctggatttccaattcttaagcattcattttttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G00370.1 (Glycine max), 3'ss of exon 4
gtaaatattctgtaggtacacaaacttacatccactttatatgactttaacctgcaaaaggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
||   || ||| | | |      |     |  ||  |    |  |  |      || ||    | |||| ||  | ||||     ||||| || || ||||| ||| |||| |||||||||||||||||||||| ||||||| ||||  |||
gtttgtactctat-gctcttgtgataggtagtcatctggagttccaattctaaacagaatctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAACTGTTTGCTTGAGCAGTG

upper sequence: GRMZM2G328265_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 3'ss of exon 4
gtaaatattctgtaggtacacaaacttacatccactttatatgactttaacctgcaaaaggaat-acagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
     | |  |   | ||      |||| |    |   || |  |  |  |    | | | | |  |||| ||| | ||||     ||||| || || || |||||| |||||||||||||||| ||||| ||| |||||||  |||||||||
--gtttgtcttagtgttaatgtttcttaaaatgtcaggatgtttcccttcctaaaacatgtagttgcagGAAAGTTGGAGAAAGGTGCTGTTCTGAAGGCCATTTGTTCTGGTTTTGAGGAAACCACTGAGCCAGATGTTTGTTTGAGTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtacacaaacttacatccactttatatgactttaacctgcaaaaggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGGAAACTACTGAACCAAATGTTTGCCTGAGTGGTG
                      tttatatgactttaa  TA-rich tract