1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttgggtgccatagtgcagttcttctttcattaaacggacacagtaatgtattgcaatcagttacagttatgatgtagtatcaaacttgatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAGATAATGATCCTGCACTTAAAGAGGTTCAGTTATGGAAATAATGGGAGCA
species | Zea mays |
transcript | GRMZM2G327635_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAG GCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAGEST: gi|87153575|gb|DY398364.1|DY398364
genomic: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAGgtatctacct ... gatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAG
EST: TGTTCTCTACCCCCGAATCTTTGGAAGGATACAGAACAACTGCTGGAAAG GCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTTCAAAAEST: gi|24773487|gb|CA408741.1|CA408741
genomic: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAGgtatctacct ... gatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAG
EST: TGTTCTCTACCCCCGAATCTTTGGAAGGATACAGAACAACTGCTGGAAAG GCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTTCAAAAEST: gi|24934826|gb|CA453044.1|CA453044
genomic: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAGgtatctacct ... gatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAG
EST: TGTTCTCTACCCCCGAATCTTTGGAAGGATACAGAACAACTGCTGGAAAG GCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTTCAAAAEST: gi|60346943|gb|DN213916.1|DN213916
genomic: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAGgtatctacct ... gatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAG
EST: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAG GCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAGEST: gi|89755372|gb|DY685818.1|DY685818
genomic: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAGgtatctacct ... gatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAG
EST: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAG GCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACG
genomic: TGTTCTCTACCCCTGAATCTTTGGAAGGATACAGAACCACTGCTGGAAAGgtatctacct ... gatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACG
gtaatgtattgcaatcagttacagttatgatgtagtatcaaacttgatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAGATAATGATCCTGCACTTAAAGAGGTTCAGTTATGGAAATAATGGGAGCA
acttgat putative branch site (score: 129)
ttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgggtgccatagtgcagttcttctttcattaaacggacacagtaatgtattgcaatcagttacagttatgatgtagtatcaaacttgatcttgcagGCTGGTTTGGTGACAGCTAGAAAGTCATTCAAGATACACGCCCTTCCAAAGATAATGATCCTGCACTTAAAGAGGTTCAGTTATGGAAATAATGGGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - ggtgcca
- - - - - - - - tgcagtt
- - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - ggacaca
- - - - - - - - - - - - - - - - - - - - - - - - -tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta