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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtctcgccgagaagactgttgtcttgtttataaaagatggtgatcaacacaataatcttcatgacatgcagTGCATGTGGTATGCGCTCTTTCTCCTCTGCTATCTATCGCCTATGTTTACTCTCTATCCAACTACAAGATATATATCACTTAAG

Basic information

species Zea mays
transcript GRMZM2G321276_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G321276_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g43030.1 (Oryza sativa), 3'ss of exon 15
-----------------------------------------------------gttggtctcgccgagaagactgttgtcttgtttataaaagatggtgatcaacacaataatcttcatgacatgcagTGCATGTGGTATGCGCTCTTTCTCCTCTGCTATCTATCGCCTATGTTTACTCTCTATCCAACTACAAGATATATATCACTTAAG--------------------------------------------
                                                       | | ||  | || || |  |    | | ||| ||    |  ||| || |   |    || || ||  ||   ||   | | ||||    |    || ||    |    ||     | | ||  |||   |  ||  |||     | | |    ||||                                            
gtacaataataattgattatatgcgtatcagaactttcttctgttacagtctcactagcctttctgaaaaaaaagaaaccct-tttctactgcagtgtgctcca---agctgtcctc-tgttatttggt---tatagtatatatttcaactgcttattttgtaatttgtgaagGTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAGCACAATAATCTCCATGACATGCAGTGCATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtcttgtttataaaagatggtgatcaacacaataatcttcatgacatgcagTGCATGTGGTATGCGCTCTTTCTCCTCTGCTATCTATCGCCTATGTTTACTCTCTATCCAACTACAAGATATATATCACTTAAG
                                       tcttcat  CT-rich tract
       ttgtttataaaagat  TA-rich tract