1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tatgtcagtagcttgcttatatcgttccatttacctgcaggggtggaagacattttttgaggaaccagttatgttgatagcttttgttcttctagggaagAATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTGCTTAGTATTCTTCCATCTAAAGCACGCCTAATGGTGGATAATGATGCTG
species | Zea mays |
transcript | GRMZM2G315931_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCATTCCGAAGCTG AATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTGEST: gi|211050286|gb|FL014622.1|FL014622
genomic: CTTTGTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCATTCCGAAGCTGgtagctccta ... tctagggaagAATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTG
EST: CTTTGTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCATTCCGAAGCTG AATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTG
genomic: CTTTGTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCATTCCGAAGCTGgtagctccta ... tctagggaagAATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTG
gaagacattttttgaggaaccagttatgttgatagcttttgttcttctagggaagAATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTGCTTAGTATTCTTCCATCTAAAGCACGCCTAATGGTGGATAATGATGCTG
tgttgat putative branch site (score: 4)
cttttgttcttct putative PPT
attttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtcagtagcttgcttatatcgttccatttacctgcaggggtggaagacattttttgaggaaccagttatgttgatagcttttgttcttctagggaagAATCTGGAGCAGAGGGCAAAACTTAAAGCTACCAGTGATATGACTGGACTGCTTAGTATTCTTCCATCTAAAGCACGCCTAATGGTGGATAATGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - -agcttgc
- - - - - - - - - - - - - - - - -cctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat