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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatgaaaacttatatcttttttagggactccaatagaagaaggcatatacagtaaccgtggttgtttctatcttaattgatgtttatttaaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT

Basic information

species Zea mays
transcript GRMZM2G314386_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314386_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g49530.1 (Oryza sativa), 3'ss of exon 4
------caatgaaaacttatatcttttttagggactccaatagaagaaggcatatacagtaaccgtggttgtttctatcttaattgatgtttatttaaact----aacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT
      |||||||||   |   ||| ||  ||    |||| ||  |||   || ||| | |     |  ||||||| ||||||||||  | |||     |     || ||||||||| ||| |||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
aatctccaatgaaaa---aggacttgttctgg----ccaa-agtcgaa--tatttactggatgttggaatgtttctttcttaattgacttatatccgtgccttgcaatagGTCTATCGGTGAATGGAGATAGTCAAGGCTTAGAGCGACTCCTTGGAGCCCTTTCTGCACACATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT

upper sequence: GRMZM2G314386_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G32900.1 (Glycine max), 3'ss of exon 4
-ca-atgaaaacttatatcttttttagggactccaatagaagaaggcatatacagtaaccgtggttgtttctatcttaattgatgtttatttaaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT
 || ||  |||||| |     ||      |||  |  | |  | |    | |  | ||   |  ||     ||| |  |||       | |||   | |||||  | ||  | |||||||||   |||||  | ||||| |||   || || |||||||| |||||||||||||||||| |  ||||||||||  | || ||
ccatattcaaactttttctgcttaccaaaacttaaggatataatgatgaacattggaaaattattttcagatatat-gattttcacacaattat-tttacagGCTTGTCCATAGATGGTGATTTACAAGGAGTTGAGCGTCTCTACGGTGCACTTTCTGCTCATATGTGGCCTGGAATGGTATTGAAATCTGGCGATAGGAT

upper sequence: GRMZM2G314386_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA16G21560.1 (Glycine max), 3'ss of exon 4
caatgaaaacttatatcttttttagggactccaatagaagaaggcatatacagtaaccgtggttgtttctatcttaat-tgatgtttatt-taaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT
  |  |  |  |      |||||  |  | |||| |    | |  | |   |  |||  |||    || | |    || | ||    |   | |  | |||||| | ||  | |||||||||   |||||  | ||||| |||   || || |||||||| |||||||||||||||||| |  |||||||||| || || ||
--accatcatattcgaactttttctgctcaccaaaatttaaggatagaatgatgaacattggaaaattattttcagatataattcacacaattattttacagGTTTGTCGATTGATGGTGATTTACAAGGAGTTGAGCGTCTCTACGGTGCACTTTCTGCTCATATGTGGCCTGGAATGGTATTGAAATCTGGCAATAGGAT

upper sequence: GRMZM2G314386_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G65960.1 (Arabidopsis thaliana), 3'ss of exon 4
------------------------------------------------------------------caatgaa-aacttatatcttttttagggactccaataga---agaaggcatatacag----taaccgtggttgtttctat--cttaattgatgttta----tttaaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT
                                                                  |  || | | ||| ||      ||  | |    ||  ||   | || | ||   |||    ||  |||  | || ||| |  | | | ||| | | |    ||    ||   |||| ||||||| ||||| |||   |||||  | || || ||  |||| |||||||| || |||||||||||||| |||||||||||||||||  | || ||
gtaagttctatctccttccttctgattatatattgactgcaatatgcccaatgtaatctggttactccttgtatagcttctactgaacttgtgaatgaaaagtgagtgaaaatggatgagcagagaatacgcgtattcgtctctctagcattaatgaggctcacgggttggtccttgtagGTTTATCAGTCGATGGGGATTCTCAAGGGGTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGAT

upper sequence: GRMZM2G314386_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv07s0031g02260.t01 (Vitis vinifera), 3'ss of exon 4
caatgaaaacttatatcttttttagggactccaatagaagaaggcatatacagtaaccgtggttgtttctatcttaattgatgtttatttaaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT
|  | || |||  | ||      ||         | |||  ||    ||       || |  | | |  |   || ||  |   |   |     | |||||| | |||||  ||||||||   |||||  | ||  || |||| || || |||||||| |||||||||||||||||||  |||||||||||  | |  ||
ccttcaacactattctcccacaaagtttaggtcttggaaagagttccatttttcttcctttttcggtcatccatttatataaactggctgttcatgacagGTTTGTCAGTTAATGGTGATTCACAAGGAGTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatacagtaaccgtggttgtttctatcttaattgatgtttatttaaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAAT
                    tttctatcttaattga  TA-rich tract