1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagcttttgagacagttactaatgtttgtgaagaaagacttcattttaacttctttttattactttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGAAATTGGTTATTTAAGAACAAGGAACATGGAAA
species | Zea mays |
transcript | GRMZM2G314233_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAG GACAAGTTGATGACCGCTCCATCTGATTC-CCCAGCAGCGGGTCT-CCGGAEST: gi|32844567|gb|CD984248.1|CD984248
genomic: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAGgttagctttt ... ctttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGA
EST: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTNGGTTTGGCAAG GACAAGGTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGAEST: gi|87151923|gb|DY396712.1|DY396712
genomic: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAGgttagctttt ... ctttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGA
EST: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAG GACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGAEST: gi|20300205|gb|BQ163148.1|BQ163148
genomic: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAGgttagctttt ... ctttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGA
EST: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAG GACAAGTTGATGACCGC-CCATCTGATTCACCCAGCAGCGGGTCT-CCGGA
genomic: ATTTAGCTGCAACATTTGTAAATGCATTTGTGAATGCTGGGTTTGGCAAGgttagctttt ... ctttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGA
actaatgtttgtgaagaaagacttcattttaacttctttttattactttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGAAATTGGTTATTTAAGAACAAGGAACATGGAAA
cttctttttattactt CT-rich tract
ttcattttaacttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttttgagacagttactaatgtttgtgaagaaagacttcattttaacttctttttattactttgtgcagGACAAGTTGATGACCGCTCCATCTGATTCACCCAGCAGCGGGTCTTCCGGAAATTGGTTATTTAAGAACAAGGAACATGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA