1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggtgagctgcaagacatggcctgaacagttgcacataacaactgattttaccgagatttagcttagtatagtattttagtatggtcttttccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTACTTTATGCTGTGGATCCAGTTCTGCATACTTTGACCTTTGAGCATGTGG
species | Zea mays |
transcript | GRMZM2G313649_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCTTAAATGCT GAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTAEST: gi|60343573|gb|DN210546.1|DN210546
genomic: AAGCGCTTAAATGCTgttagtctct ... ccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
EST: ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCT GAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTAEST: gi|211475124|gb|FL216727.1|FL216727
genomic: ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCTgttagtctct ... ccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
EST: ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCT GAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
genomic: ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCTgttagtctct ... ccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
ttttaccgagatttagcttagtatagtattttagtatggtcttttccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTACTTTATGCTGTGGATCCAGTTCTGCATACTTTGACCTTTGAGCATGTGG
tcttttccat CT-rich tract
ttagtatagtatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgagctgcaagacatggcctgaacagttgcacataacaactgattttaccgagatttagcttagtatagtattttagtatggtcttttccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTACTTTATGCTGTGGATCCAGTTCTGCATACTTTGACCTTTGAGCATGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG