1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgggtacaatatccttttcgccaacaccttctgtttaatgcattcactttattgagctatgaagtctagtttatggctgtcaagatcagtagcaatcgacccatctgagttgcatcgtggctattgatttgcaacttatatatgttaaatctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAGCGGTGGACCTATATGTGCTAGAGAGAGCTTTGATTTCCATGCATTCGT
species | Zea mays |
transcript | GRMZM2G313649_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|88748628|gb|DY532769.1|DY532769
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|71442372|gb|DR823422.1|DR823422
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|76294398|gb|DV033966.1|DV033966
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|213182702|gb|FM195363.1|FM195363
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGATTT-GACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGNCNGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|60343573|gb|DN210546.1|DN210546
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|32836689|gb|CD976367.1|CD976367
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGATTT-GACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|71762245|gb|DR960182.1|DR960182
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|88748493|gb|DY532634.1|DY532634
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGA-TTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAEST: gi|32942234|gb|CF047053.1|CF047053
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
EST: TGATTT-GACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTG GTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
genomic: TGATTTTGACCACGTCAAACATGATAATTAAGAACAGTAACAATCAATTGgtgggtacaa ... atctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAA
tctgagttgcatcgtggctattgatttgcaacttatatatgttaaatctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAGCGGTGGACCTATATGTGCTAGAGAGAGCTTTGATTTCCATGCATTCGT
tattgat putative branch site (score: 3)
tctttgc putative PPT
aacttatatatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtacaatatccttttcgccaacaccttctgtttaatgcattcactttattgagctatgaagtctagtttatggctgtcaagatcagtagcaatcgacccatctgagttgcatcgtggctattgatttgcaacttatatatgttaaatctttgcagGTTCTTATTGATTTTGGGCTGAGTTTCACTTCGACAATTCCCGAGGACAAAGCGGTGGACCTATATGTGCTAGAGAGAGCTTTGATTTCCATGCATTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT