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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctatctatttgtttattttgtgatttctgctccttgcctccttctagagatttcacatacgtaaaaaacatccataatgttgtctacaatctttgcagATCCGAAATGAGAAGGCCAGGAGATACTTAAGCTGCATGCGGAAAAAATATCCCGTGCCCTTTACTCATAAATTTCGAAATGCCGATCCTTTGGCTCTTC

Basic information

species Zea mays
transcript GRMZM2G306028_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G306028_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g49430.1 (Oryza sativa), 3'ss of exon 5
-----------ctctatctatttgtttattttgtgatttctgctcctt-gcctccttctagagatttcacatacgtaa------aaaacatcca---taatgttgtctacaatctttgcagATCCGAAATGAGAAGGCCAGGAGATACTTAAGCTGCATGCGGAAAAAATATCCCGTGCCCTTTACTCATAAATTTCGAAATGCCGATCCTTTGGCTCTTC
            | || | |||    ||| |  |     || ||  |  |   | ||| |||   | ||  |   |||       |||||  ||   || |||| ||| |  ||| ||||||| |||||||||||||||||||||||||| |||  ||||||||||||| || | || |||||  |||| || || || ||| | || || ||||||||||
gtatgtttactttataccgattctcatatatccttgaacctcctattcagtaacattcaagaagatccaattctctaataagatgaaacaatcaccttactgttttctgcg-tctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATGCTGTCCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211067858|gb|FL021104.1|FL021104
EST:     TAACAGATCTTCTTGGAACTCCATCATCTGAGACCTTATCTCGG                         ATCCGAAATGAGAAGGCCAGGAGATACTTAAGCTGCATGCGGAAAAAATAT
genomic: TAACAGATCTTCTTGGAACTCCATCATCTGAGACCTTATCTCGGgtactgcatc ... atctttgcagATCCGAAATGAGAAGGCCAGGAGATACTTAAGCTGCATGCGGAAAAAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagagatttcacatacgtaaaaaacatccataatgttgtctacaatctttgcagATCCGAAATGAGAAGGCCAGGAGATACTTAAGCTGCATGCGGAAAAAATATCCCGTGCCCTTTACTCATAAATTTCGAAATGCCGATCCTTTGGCTCTTC
                                              tctttgc  CT-rich tract
                  taaaaaacat  TA-rich tract