Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttagctgagattgtatttgttattccattcaactaggcttttctttatgatacaaattgttagtgtagatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA

Basic information

species Zea mays
transcript GRMZM2G305159_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 3'ss of exon 4
-cttagctgagattgtatttgttattccattcaactaggcttttctttatg-atacaaattgttagtgta-gatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
 ||| ||||  |  |||||  | |||   || |   |   ||   |||  |  ||  |  | |  ||| |  | || |||||||| | |||  |||  ||||||| |||||||| |  || |||||||||||||||||||| ||||||   |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||
ccttggctgtaacagtattcatcatt--gtttagtgacatttgattttccgtgtatgatatatctgtggacaagttgtgatgcaagt-tttatctgtttgcagGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATTTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGA

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA03G29010.1 (Glycine max), 3'ss of exon 5
cttagctgagattgtatttgttattccattcaactaggcttttcttta-tgatacaaattgttagtgtagatttatgatgcaaatgtttggctggat--gcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
  |||  |  |    |||| ||   | | ||   ||   ||| ||||  ||  |   ||   || |     ||| ||      ||  ||   |  ||   |||||||| ||||||||||| ||||| || |||||||||||||| ||||  || ||||| |||||||  | |||||| ||||| || ||  | |||||||| |
--tagtagttacatcatttatttaccgactct-ttaatttttcctttgctgccattgatacctattaacattttttgtccttcataattaatttcatttacagGTCGCTAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACGACTATTGTCAATGTTGTCAAATGGGGACGTGCAGTATATATAAACATTCAAA

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 2
cttagctgagattgtatttgttattccattcaacta--ggcttttctttatgatacaaat-tgttagtgtagatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
  ||  ||    | | ||| |  |    ||  | ||  | || ||   ||  || || || |  |||  |   ||| || |  | |  |    |    | ||||| || ||||||||||||||||| || |||||||||||||| ||||  || ||||| |||||||  | |||||| ||||| || ||| | |||||||| |
--tacgtggcggtttctttttcctctttttatattaatgactctttgctaccattcatatctagtagcattt-tttgtgcttgataattaataccatttacagGTTGCCAAAGAAAATGCCGATGTCATTATAATGGATGATAACTTCACGACTATTGTCAATGTTGTCAAATGGGGACGTGCAGTATACATAAACATTCAAA

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA02G32780.1 (Glycine max), 3'ss of exon 4
cttagctgagattgtatttgttattccattcaact-aggcttttcttta--tgatacaaattgttagtgt-agatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
   |       |  ||||||||      |  |  | |   | ||   |   ||||   | |   || | | |  |||    |    |  ||   |    | ||||| || ||||||||||| ||||| || |||||||||||||| |||| ||| ||||| ||||| || || ||||| || ||  | ||| | |||||||| |
---aatccttgtcctatttgtttcgatgtctattttatattattacctggttgatgtta-tcactaatattatttttccttttttgaaattataccttttacagGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAGGTGGGGACGGGCCATATACATAAACATTCAAA

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G15800.1 (Glycine max), 3'ss of exon 4
cttagctgagattgtatttgttattccat-tcaactaggcttttctttatgatacaaattgttagtg----tagatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
   |  |    |  |||||||  ||| || || | |     ||  | | || |  |  || | |       ||  |||    |   ||  ||   |    | ||||| || ||||||||||| ||||| || |||||||||||||| |||| ||| ||||| ||||| || |||||||| || ||  | ||| | |||||||| |
---aattcttgtcatatttgt--ttcgatgtctattttatattattgtctggttgacgttatcaccaatactatttttccttttttaaaattataccttttacagGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAGATGGGGACGGGCCATATACATAAACATTCAAA

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 3'ss of exon 4
cttagctgagattgtatttgttattccattcaactaggcttttctttatgatacaaattgttagtgtagatttatgat-gcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
         |   |   | |||||||  |   | | |  |||  || || | | ||  |     |  | ||||  | | |    |  ||  |   |||||||| || ||||| ||||| ||||| || |||||||| ||||| ||||  || || |||||||| ||||||||||| ||||| || ||  | ||||||||||
---------gtaagctatagttattctctgttattgg--tttggttaataaaaaaatctcgagattaacattttcgtttggtgctaattcccgatatgcagGTTGCGAAAGAGAATGCTGATGTGATCATAATGGACGATAACTTCAAAACAATAGTAAATGTGGCTAGATGGGGACGTGCTGTATATATAAACATTCAGA

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv13s0158g00360.t01 (Vitis vinifera), 3'ss of exon 4
-------cttagctgagattgtatttgttattccattcaactaggcttttctttatgatacaaattgttagtgtagatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
         |     | || |||  |  | ||  |   | | |||   |      | ||||  ||  | |    ||  |  |    | | ||||        | ||||| |||||||||||||| ||||| || |||||||||||||| |||   || || || |||||||| |||||||| ||  | || ||| | || ||||| |
cattctttcttttgaaaatggtaacttcttttaaacatatcaaggaggtgtgccttaatacttatcatcaaccaagcatctt--ccccactgtt-----atctacagGTGGCAAAAGAAAATGCGGATGTGATTATAATGGATGATAACTTCTCGACTATAGTGAATGTTGCCAGATGGGGCCGGTCAGTCTACATAAATATTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgatacaaattgttagtgtagatttatgatgcaaatgtttggctggatgcagGTCGCAAAAGAAAATGCCGATGTTATAATAATGGATGATAATTTCAGTACCATTGTAAATGTTGCTAGATGGGGTCGTGCGGTTTACTTGAACATTCAGA
     atacaaatt  TA-rich tract