1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgtttgaaattcgctttgaatatgctcgctaactgcacagcagttttgttcatcaatgtttacaaaaccctcaatacttatcgtctttcgaaattgcagCAGGAATCAACGCAAGCAGCTTGCAGACATGCTTCTCGGGTGGAGGAGGTGGCCAGAAACAGTTGCCAGCAGATGTTCGTGGATCTAAATTCCCACTGCA
species | Zea mays |
transcript | GRMZM2G305080_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGAGGTGGCCAGTCTTAGGAGTCTGCTGGAGAAGCCTGCTGGCCAA CAGGAATCAACGCAAGCAGCTTGCAGACATGCTTCTCGGGTGGAGGAGGTG
genomic: TGAAGGAGGTGGCCAGTCTTAGGAGTCTGCTGGAGAAGCCTGCTGGCCAAgtaagtacaa ... gaaattgcagCAGGAATCAACGCAAGCAGCTTGCAGACATGCTTCTCGGGTGGAGGAGGTG
tttgttcatcaatgtttacaaaaccctcaatacttatcgtctttcgaaattgcagCAGGAATCAACGCAAGCAGCTTGCAGACATGCTTCTCGGGTGGAGGAGGTGGCCAGAAACAGTTGCCAGCAGATGTTCGTGGATCTAAATTCCCACTGCA
tctttcg CT-rich tract
tttacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttgaaattcgctttgaatatgctcgctaactgcacagcagttttgttcatcaatgtttacaaaaccctcaatacttatcgtctttcgaaattgcagCAGGAATCAACGCAAGCAGCTTGCAGACATGCTTCTCGGGTGGAGGAGGTGGCCAGAAACAGTTGCCAGCAGATGTTCGTGGATCTAAATTCCCACTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
gtgtttg
- - - - - - - - - - - -tgctcgc
- - - - - - - - - - - - - - - - - - -acagcag
- - - - - - - - - - - - - - - - - - - - - - - - gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa