1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtacagcaacagagaaattaccccgcatatcttctttctgttgctgttattttaacactggaaataaaactctggtgtgatctactgatctgttttgtagGATAAGCCTGATGACCCTGATGCTGAAGCACGTGTGAACTCTGTTAGGGGGCTAATTTCGGTTTGCGAAACACTAACAGCATCTTTTGATCAGCTCTCAA
species | Zea mays |
transcript | GRMZM2G303758_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAATGGATGCCTGTCATGAGTAAACTCTGTAGCTCATGCACCATTGAG GATAAGCCTGATGACCCTGATGCTGAAGCACGTGTGAACTCTGTTAGGGGG
genomic: TGAAATGGATGCCTGTCATGAGTAAACTCTGTAGCTCATGCACCATTGAGgtaattcctg ... tgttttgtagGATAAGCCTGATGACCCTGATGCTGAAGCACGTGTGAACTCTGTTAGGGGG
gttattttaacactggaaataaaactctggtgtgatctactgatctgttttgtagGATAAGCCTGATGACCCTGATGCTGAAGCACGTGTGAACTCTGTTAGGGGGCTAATTTCGGTTTGCGAAACACTAACAGCATCTTTTGATCAGCTCTCAA
tactgat putative branch site (score: 19)
tctgtttt CT-rich tract
aaataaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagcaacagagaaattaccccgcatatcttctttctgttgctgttattttaacactggaaataaaactctggtgtgatctactgatctgttttgtagGATAAGCCTGATGACCCTGATGCTGAAGCACGTGTGAACTCTGTTAGGGGGCTAATTTCGGTTTGCGAAACACTAACAGCATCTTTTGATCAGCTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - -gcaacag
- - - - - - - - - - ccccgca
- - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctactg