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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctggcagtgggtctgccctttttagtgttttcttcattaccctgtttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT

Basic information

species Zea mays
transcript GRMZM2G181151_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 5
---tctggcagtgggtctgcccttttta-gtgttttcttcattaccctgtttattgtgaaaatcctgtcttgtttgat-tatgcagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
        |  |  || |      ||||  | ||||| |  ||  | |||      ||||    | |  ||| || || | ||  |||     |  ||  || ||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || || || || || |||||||
tgaataatctataagtttttgtagtttatatcttttccttgtttgcatgta-gcactgaagtagcggcattgcttaatatgtgtggta----attctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGATCTGGAAAACCCATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACT

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 5
tctggcagtgggtctgccctttttagtgttttcttcattaccctgt--ttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttctt-acagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
| |  |  ||  | |   |||||   || |   || | |    ||   | | | |      ||| |    ||    | | |    | || ||||| |  |||||| || ||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||| || || || |||||||| || ||| 
tttttctttgaattt---cttttacatgctacttttactgtattggaatcaatttattccaccttttaacttcctcttttcctctctttttgtttgtccacagGTGTTAAAAACTCCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACC

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 5
tctggcagtgggtctgccctttttagtgttttcttcattaccctgttta---ttgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttctt-acagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT-
        |   |    |||||||  | ||   |   | |   |||||      ||  || |  || ||    |  ||         ||||| ||| || |||||| || |||||||| || ||| | || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || || |||||||| || |||| 
-----tgattattgaatcctttttcattttgattctttgattttgtttgaatcagtttaactgttgactcccattttttccttaattattgtttttgttcacaggTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTT

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 5
tctggcagtgggtctgccctttttagtgttttcttcattaccctg-tttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttctt-acagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
|     | ||  |||      ||| |  || | |   || |  || || | | | |   |    ||   |||  ||   || |  ||||| ||| || |||||| || |||||||| || ||| | || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| || || ||||
ttgattattgaatctttttcattttg-attgtttgatttgctttgattcagtttaactgttgactcccattttttttctcaat-tattgtttttgttcacagGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACT

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 6
tctggcagtgggtctgccctttttagtgttttcttcattaccctgtttattgtgaaaatcctgtcttg--tttgattatgcagtacattgtgtttctt-acagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
| |  |  ||  | |   |||||   ||||   || |||    ||      ||  |   |   | |||  ||    | | |    | || ||||| |  |||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||| ||||| || || || |||||||| || ||| 
tttttctttgaattt---cttttacatgttacttttattgtattggaatcagtttattccaccttttgacttcctcttttcctctctttttgtttgtccacagGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACC

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 5
------tctggcagtgggtctgc-cctttttagtgttttcttcatt-accctgtttattgtgaaaatcctgtcttgtttgattatgcagtac-attgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
      |     |      || |  |  |  ||  |||     |||        | ||||    | | |||  |  |    || |     ||   | ||| |||| |||||||||||||| ||||| ||| | || |||||||||||||| ||||| ||||| ||||| || ||||| |||||||| || ||  | || ||||| ||| 
gtaatttaccataaaaatccttcgtccctccagcatttcgcagatttgttgaaatgattggttgatttctgcttcctgcattttttttaaaccggtttgtgtctttcagGTTTTGAAAACACCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACC

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 6
tctggcagtgggtctgccctttttagtgttt-tcttcattaccctgtttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
                           |||| | ||   ||||  ||||      |  |   | | |  | |  | |     | || ||| |||   | ||||||||||||||||||| ||  | ||||||||||| ||||| || |||||||| || || || |||||||| || || || ||||| ||||| || ||||
---------------------------gtttgtttttgctaccaagttttaaagtatcagtgtctataatatactcacattttccaatgttttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACT

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 5
-tctggcagt---gggtctgccctttttagtgttttcttcattaccctgtttattgtgaaaatcctgtct-tgtttgattatg-cagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
 ||  ||  |   | |  |||  | | |||| |    || |  | |   ||  || |     | ||||   | ||| ||| || |  |   ||    ||  |||||||||||||||||||||||||| | |||||||||||||| || ||||||||||| || ||||| ||||| ||||| || || ||||| || || || ||||
gtcaagcctttctgtgattgctatctctagtatcagtttgag-atcaacttctttct-----ttctgtagatatttcattgtgtccctttcttaccctttatacagGTTTTGAAAACTCCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACT

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 5
-----tctggcagtgggtctgccctttttagtgttttcttca-ttaccctgtttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
     |||   || |  | |  | ||  |  |    || ||| ||   |||  |||| ||  |||   |   ||||||  |  |  | | ||| ||||   | |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||  | || || || ||| 
ctctctctacaagagcctttctctttacttttaacctcctcagtttgtctgaatattttggcaat---gaaatgtttgtctg-gttgaatattttgttg--tgcagGTTTTGAAAACACCTGTATCACTGGATATGCTTGGCCGCATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCCCCAATTCTGCCAGAGGCTTACC

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 5
tctggcagtgggtctgccctttttagtgttttcttcattaccctgtttattgtgaaaatcctgtcttgtttgattat------gcagtacattgtgtttct--tacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
           ||| |     | |  | ||||  |    | |  | ||     || |    | |  |  | ||||||      |||||   || |  || |  |  ||||  ||||||| || |||||  | || ||||| || || ||||| ||||||||||| |||||||||||||| ||||| || ||  |  | ||||| ||  
--------attgtccgaatgatattctatttttctatggatcgcggttgggccgacatgtgtttactactcgattatcgacctgcagttggttcttgttgtggtttagGTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGTTCTGGCAAACCTATTGACAACGGCCCTCCAATTCTTGCAGAAGCTTATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211464055|gb|FL062026.1|FL062026
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32919410|gb|CF024222.1|CF024222
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211464049|gb|FL062020.1|FL062020
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33102006|gb|CF061966.1|CF061966
EST:     GAACTTCTGAAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211045587|gb|FL062119.1|FL062119
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211474170|gb|FL062078.1|FL062078
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32908718|gb|CF013531.1|CF013531
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211223693|gb|FL399500.1|FL399500
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     GAACTTCTGGAATAGACAACAAATACACANCCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211279000|gb|FL407011.1|FL407011
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211469118|gb|FL062056.1|FL062056
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTTAATGG
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCA-TTTTTAATGG
EST: gi|211476688|gb|FL062089.1|FL062089
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     AACAAATACTC-CCCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: AACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211466586|gb|FL062037.1|FL062037
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACACGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211131888|gb|FL371457.1|FL371457
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211471640|gb|FL062065.1|FL062065
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211332062|gb|FL381794.1|FL381794
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32851420|gb|CD991101.1|CD991101
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTT
EST: gi|211124910|gb|FL425297.1|FL425297
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTATGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTCTAATGCT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33100666|gb|CF060626.1|CF060626
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211461534|gb|FL062016.1|FL062016
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211045584|gb|FL062116.1|FL062116
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211132918|gb|FL391883.1|FL391883
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33100729|gb|CF060689.1|CF060689
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211172669|gb|FL375066.1|FL375066
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211464053|gb|FL062024.1|FL062024
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211439866|gb|FL422480.1|FL422480
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211427007|gb|FL427232.1|FL427232
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|13389395|gb|BG462701.1|BG462701
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211034220|gb|FL370384.1|FL370384
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTT
EST: gi|211459002|gb|FL061993.1|FL061993
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211332674|gb|FL416300.1|FL416300
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211466587|gb|FL062038.1|FL062038
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCGGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211466593|gb|FL062044.1|FL062044
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211466594|gb|FL062045.1|FL062045
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTTATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|211448189|gb|FL410292.1|FL410292
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|24462502|gb|BM660033.1|BM660033
EST:     AACTTCTGGAATAGACAACAAATACACAACCGTTGCAGTTTACAGGCGAG                         GTTTTGAAAA-TCCTGTCTCACTCGATATGCTTGGGC
genomic: AACTTCTGGAATAGACAACAAATACACAACCGT-GCAGTTTACAGGCGAGgtgcttcatc ... tttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT
                      gtttgat  putative branch site (score: 5)
                                           tgtttctt  putative PPT
                       tttgattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctggcagtgggtctgccctttttagtgttttcttcattaccctgtttattgtgaaaatcctgtcttgtttgattatgcagtacattgtgtttcttacagGTTTTGAAAACTCCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC