1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatgcaccatagttaatgataatgtttttaccaagcttgttcttgccttggacatgtctgctgtcactctcatcttctctgtttaaatatgtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACAT
species | Zea mays |
transcript | GRMZM2G180990_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCACCTGGTGGTGCCTTAGACGACGAA-T-GCAGGAGGAAACACCAGTG GCTAAAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGEST: gi|113653615|gb|DW813921.1|DW813921
genomic: TTCACCTGGTGGTGCCTTAGACGACGAAGTCG-AGGAGGAAACACCAGTGgtaaatggct ... gtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAG
EST: CCTTAGACGACGAAGTCGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGEST: gi|60337104|gb|DN204077.1|DN204077
genomic: CCTTAGACGACGAAGTCGAGGAGGAAACACCAGTGgtaaatggct ... gtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAG
EST: CTTCACCTGGTGGTGCCTTAGACGACGAAGTCGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGEST: gi|32830364|gb|CD970042.1|CD970042
genomic: CTTCACCTGGTGGTGCCTTAGACGACGAAGTCGAGGAGGAAACACCAGTGgtaaatggct ... gtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAG
EST: TTCACCTGGAGGTGCCTTAGACGACGAAGTCAGAG-AGGAAACACCAGTG GCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGEST: gi|166562785|gb|EG307348.1|EG307348
genomic: TTCACCTGGTGGTGCCTTAGACGACGAAGTC-GAGGAGGAAACACCAGTGgtaaatggct ... gtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAG
EST: GGTGGTGCCTTAGACGACGAAGTCGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAG
genomic: GGTGGTGCCTTAGACGACGAAGTCGAGGAGGAAACACCAGTGgtaaatggct ... gtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAG
ccttggacatgtctgctgtcactctcatcttctctgtttaaatatgtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACAT
tgtttttcc CT-rich tract
tgtttaaatatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcaccatagttaatgataatgtttttaccaagcttgttcttgccttggacatgtctgctgtcactctcatcttctctgtttaaatatgtttttccagGCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG