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gtcagcaagtatctacggttttacattagaaatgttcattgttacatgttcctgctgatttagagcctatctgtatctccctccttttctcttgcactttagGGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTGATTCCAAGAATGCTAGTTGTCGATCCTATGAAGCGGATCACCATTCGTG
species | Zea mays |
transcript | GRMZM2G180704_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCCATTTGATGACGAGAACATACCAAACCTTTTTAAGAAAATAAAG GGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTGEST: gi|149088317|gb|EE177414.2|EE177414
genomic: CTCTGCCATTTGATGACGAGAACATACCAAACCTTTTTAAGAAAATAAAGgtcagcaagt ... tgcactttagGGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTG
EST: TCTGCCATTTGATGACGAGAACATACCCAAAC-TTTTTAAGAAAATAAGG GGTGGAATATATACCCEST: gi|76015667|gb|DT942837.1|DT942837
genomic: TCTGCCATTTGATGACGAGAACATACC-AAACCTTTTTAAGAAAATAAAGgtcagcaagt ... tgcactttagGGTGGAATATATACCC
EST: CTCTGCCATTTGATGACGAGAACATACCAAACCTTTTTAAGAAAATAAAG GGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTGEST: gi|211368668|gb|FL393818.1|FL393818
genomic: CTCTGCCATTTGATGACGAGAACATACCAAACCTTTTTAAGAAAATAAAGgtcagcaagt ... tgcactttagGGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTG
EST: TTGATGACGAGAACATACCAAACCTTTTTAAGAAAATAAAG GGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTG
genomic: TTGATGACGAGAACATACCAAACCTTTTTAAGAAAATAAAGgtcagcaagt ... tgcactttagGGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTG
gttcctgctgatttagagcctatctgtatctccctccttttctcttgcactttagGGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTGATTCCAAGAATGCTAGTTGTCGATCCTATGAAGCGGATCACCATTCGTG
tgctgat putative branch site (score: 188)
cctatctgtatctccc putative PPT
tgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcaagtatctacggttttacattagaaatgttcattgttacatgttcctgctgatttagagcctatctgtatctccctccttttctcttgcactttagGGTGGAATATATACCCTTCCCAGCCATTTGTCTGGTGCAGCAAGGGATTTGATTCCAAGAATGCTAGTTGTCGATCCTATGAAGCGGATCACCATTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC