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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactgaataccctattatcttctctgtgttcatttctctgcttatatatcaacaaaagatgaccctctgtgttcatcagATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGGCTCCGGCAAATAATAATGGACGCGAAAACCTACCAGTTCTACTCGTGAG

Basic information

species Zea mays
transcript GRMZM2G180659_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180659_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g03350.1 (Oryza sativa), 3'ss of exon 5
-------------------gtaagaactgaataccct--attatcttctctgtgttcattt-------------ctctgctt-atatatcaacaaaagatgaccctctgtgttca------------tcagATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGGCTCCGGCAAATAATAATGGACGCGAAAACCTACCAGTTCTACTCGTGAG
                    || |  |||  |  | |  ||  ||| | |||| ||  | |             |||||||| || |  ||     |  |||     | | ||||            |||||| |||||||||||||| ||| | || ||||| ||||| || |||||||| |||||||| || || || || || || || ||| ||||||||||||   
gtaagaacacacaaactaattatgctctgtttttcttcaatcttctcccctgtttttgtctgaaatgaaaatgcctctgcttgatcttgcattctgatctgatttgtttttttcaactgattctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGACTCCGGCAGATCATCATAGATGCCAAGACATACAAGTTCTACTCGTAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5510817|gb|AI857201.1|AI857201
EST:     TCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTGCTGGTTGACCAACTGG                         ATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGG
genomic: TCGCAATCTACAAGCCCAAGAGGTTCAGCCTCTCCTGGTTGACCAACTGGgtaagaactg ... tgttcatcagATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttcatttctctgcttatatatcaacaaaagatgaccctctgtgttcatcagATGTGCATCATTCTTGGGGTGCTCCTGATGATTCTGTCGCCCATCGGAGGGCTCCGGCAAATAATAATGGACGCGAAAACCTACCAGTTCTACTCGTGAG
                                      ccctctgt  CT-rich tract
                 ttatatatcaacaaaa  TA-rich tract