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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgaaccctctgttttcttcaatagttcacacgccatggtaatgtagttctatcataactatcatgttttgttttgcttaaccatttgtacaaattgcagGATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCTAAGGATTG

Basic information

species Zea mays
transcript GRMZM2G179793_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179793_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g47630.1 (Oryza sativa), 3'ss of exon 5
gtgaaccctctgttttcttcaatagttcacacgccatggtaatgtagttctatcataactatcatgttttgttttgcttaaccatt-----tgtacaaattgcagGATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCTAAGGATTG
     |   ||     |       ||  |   ||  ||  |||  || | | |  | ||| | |   ||  | |    | || |||       |  | ||| ||||||||| || ||| || |||||||||| ||||||||||||||   |||||| |||||||
-----ctagctacaaacgaaggatgtctatcggcattgacaattcagatatcttttgactgttagtcttcttatcttctgacaattatactcatgaacatttcagGATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCTTAGGATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661101|gb|BM501210.1|BM501210
EST:     TTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGG                         GATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCT
genomic: TTTGCGAAATTGCGTCTGCTACCAAAGGGGGGACATGGTGGCCACAATGGgtattcattt ... caaattgcagGATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctatcataactatcatgttttgttttgcttaaccatttgtacaaattgcagGATGAGGAGTATTGTTGACCATTTGAATCAGAGCCGTGATTTTGGACGCCTAAGGATTG
                     ttttgtttt  TA-rich tract