1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtcaagatgatgtcaaatttgcttgctctgtcgagttccataatcatctggatacctaatgtgacaagtcgttcatttacctttttccttttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATCCACTGGCTGATAAG
species | Zea mays |
transcript | GRMZM2G179732_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG TTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATEST: gi|211302534|gb|FL247480.1|FL247480
genomic: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATGgtaagttgat ... tttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATAT
EST: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG TTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATCEST: gi|32808296|gb|CD960530.1|CD960530
genomic: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATGgtaagttgat ... tttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATC
EST: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG TTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAEST: gi|211258574|gb|FL475694.1|FL475694
genomic: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATGgtaagttgat ... tttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTA
EST: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG TTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATC
genomic: TAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATGgtaagttgat ... tttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATC
catctggatacctaatgtgacaagtcgttcatttacctttttccttttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATCCACTGGCTGATAAG
acctaat putative branch site (score: 3)
tcgttcatttaccttt putative PPT
ttcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcaagatgatgtcaaatttgcttgctctgtcgagttccataatcatctggatacctaatgtgacaagtcgttcatttacctttttccttttcttgcagTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATCCACTGGCTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT