1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtactagtggcttaatcctttgctgcaagtgagcaaattcctattactgctacttccatttaccctgacccttcttgtttgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTGAGCACACTACAAAGCTTCAGCAATCAGAAGCTAGAATGATAGAGCACA
species | Zea mays |
transcript | GRMZM2G179459_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|149088736|gb|EE177860.2|EE177860
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|149032717|gb|EE154943.2|EE154943
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|148996112|gb|EE035378.2|EE035378
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|88757167|gb|DY541308.1|DY541308
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|149013869|gb|EE043354.2|EE043354
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|93014497|gb|EB640017.1|EB640017
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|149085767|gb|EE175287.2|EE175287
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|101389748|gb|EB816808.1|EB816808
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCCATTGCTEST: gi|149086994|gb|EE176539.2|EE176539
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|6564150|gb|AW231772.1|AW231772
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|148983017|gb|EE028919.2|EE028919
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTEST: gi|148951274|gb|EC896976.2|EC896976
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
EST: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTC TCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
genomic: GTGGTCTTGCACAGCGCTATAGCAGGATGAGACATGAAGCTGAGATCCTCgtatgtacta ... tgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCT
aaattcctattactgctacttccatttaccctgacccttcttgtttgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTGAGCACACTACAAAGCTTCAGCAATCAGAAGCTAGAATGATAGAGCACA
ccctgac putative branch site (score: 3)
cccttcttgtttgttc CT-rich tract
tattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtactagtggcttaatcctttgctgcaagtgagcaaattcctattactgctacttccatttaccctgacccttcttgtttgttcaatagTCTACTGAAATTGCTAGAAGAAAGGCACGGGTAAGAGAAGCTCCAATTGCTGAGCACACTACAAAGCTTCAGCAATCAGAAGCTAGAATGATAGAGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA