1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagagtttccattcctttctgctaggaagtacactgttactgtacgctgttactgcatgactttccgtatctgatttcataacttttgacagATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCTTTGCCAGCAGAAGAATTTCTCATCAGCAGTTTTACCTGCTACTTGAAGA
species | Zea mays |
transcript | GRMZM2G179351_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATGGTCACTGAGTATCTGAGCAAAATGGAGAAAGAGGTTGGTAAGAAG ATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCTEST: gi|18965072|gb|BM661375.1|BM661375
genomic: GCATGGTCACTGAGTATCTGAGCAAAATGGAGAAAGAGGTTGGTAAGAAGgtgagagttt ... cttttgacagATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCT
EST: CATGGTCACTGAGTATCTGAGCAAAAATGGAGAAAGAGGTTGGTAAGAAG ATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCTEST: gi|22490377|gb|BU050300.1|BU050300
genomic: CATGGTCACTGAGTATCTGAGC-AAAATGGAGAAAGAGGTTGGTAAGAAGgtgagagttt ... cttttgacagATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCT
EST: GCATGGTCACTGAGTATCTGAGCAAAATGGAGAAAGAGGTTGGTAAGAAG ATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCT
genomic: GCATGGTCACTGAGTATCTGAGCAAAATGGAGAAAGAGGTTGGTAAGAAGgtgagagttt ... cttttgacagATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCT
tactgtacgctgttactgcatgactttccgtatctgatttcataacttttgacagATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCTTTGCCAGCAGAAGAATTTCTCATCAGCAGTTTTACCTGCTACTTGAAGA
tcataac putative branch site (score: 25)
ctttt CT-rich tract
atttcataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagtttccattcctttctgctaggaagtacactgttactgtacgctgttactgcatgactttccgtatctgatttcataacttttgacagATGACACTGAGGTCTCCTCGGACCAATACTGCATTCCAGGAACTCTTCTCTTTGCCAGCAGAAGAATTTCTCATCAGCAGTTTTACCTGCTACTTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA