1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccacattcctgtatttgtggttacatagtcaattttgataagctctttgtgcttcactctgctatctaaggtttaaaagtacatatatttatgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCTCTGTAAAG
species | Zea mays |
transcript | GRMZM2G179281_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCEST: gi|74244789|gb|DT652703.1|DT652703
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCEST: gi|211036460|gb|FL471504.1|FL471504
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
EST: CATCGGATGACCAACAGAGCMCAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCEST: gi|71772785|gb|DR970710.1|DR970710
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCEST: gi|149101704|gb|EE187840.2|EE187840
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCEST: gi|50324921|gb|CO520047.1|CO520047
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGEST: gi|50324920|gb|CO520046.1|CO520046
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGG
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCEST: gi|74244788|gb|DT652702.1|DT652702
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
EST: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCG GAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
genomic: CATCGGATGACCAACAGAGCACAAATTTGAATTATGCAGCTAGTTCTTCGgtatgtcttc ... atgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATC
tttgtgcttcactctgctatctaaggtttaaaagtacatatatttatgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCTCTGTAAAG
tgttttc CT-rich tract
tttaaaagtacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacattcctgtatttgtggttacatagtcaattttgataagctctttgtgcttcactctgctatctaaggtttaaaagtacatatatttatgttttcagGAGGCTTCTCTTGGAGATTTGATGCTAGAGAAGCTTGATGAAGTTGAAATCTCTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-cacattc
- - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagtac