1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtttagatctaatgctagatagatccatggtggttttattcttctcgctgacagctggagtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTGGAAAAAGTGGAGCAGGAACTGGCAACAGCTGAAAAGGATCCTTCAGAGA
species | Zea mays |
transcript | GRMZM2G178996_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG ATACAACTGAAGGAGTTGGCAGAAGAAATGCAAGCGATAACTAAAGGACTGEST: gi|211470380|gb|FL227252.1|FL227252
genomic: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAGgtagtttaga ... gtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
EST: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG ATACAACTGAAGGAGTTGGCAGAAGAAATGCAAGCGATAACTAAAGGACTGEST: gi|211467359|gb|FL096460.1|FL096460
genomic: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAGgtagtttaga ... gtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
EST: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG ATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTGEST: gi|211470381|gb|FL227253.1|FL227253
genomic: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAGgtagtttaga ... gtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
EST: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG ATACAACTGAAGGAGTTGGCAGAAGAAATGCAAGCGATAACTAAAGGACTGEST: gi|211470378|gb|FL227250.1|FL227250
genomic: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAGgtagtttaga ... gtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
EST: AAGTGCTTGACTTCAGCAGGGATCTTCCAAATTTAGAACCTGCCTCAAAG ATACAACTGAAGGAGTTGGCAGAAGAAATGCAAGCGATAACTAAAGGACTGEST: gi|211470379|gb|FL227251.1|FL227251
genomic: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAGgtagtttaga ... gtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
EST: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAG ATACAACTGAAGGAGTTGGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
genomic: AAGTGCTTGACTTCAGCAGGGATCTTGCAAATTTAGAACCTGCCTCAAAGgtagtttaga ... gtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTG
ctagatagatccatggtggttttattcttctcgctgacagctggagtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTGGAAAAAGTGGAGCAGGAACTGGCAACAGCTGAAAAGGATCCTTCAGAGA
cgctgac putative branch site (score: 29)
ttttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttagatctaatgctagatagatccatggtggttttattcttctcgctgacagctggagtaaaaacagATACAACTGAAGGAGTTAGCAGAAGAAATGCAAGCGATAACTAAAGGACTGGAAAAAGTGGAGCAGGAACTGGCAACAGCTGAAAAGGATCCTTCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA