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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaaccatacatactatgtctcttccatcccctgtcgccatggcgttcacgaatcacaggaaacctgcaatccacgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGCTCTGCCCTGAGCAGACCTCCATTCGAGGCTATCGCGGACAGTACGCACG

Basic information

species Zea mays
transcript GRMZM2G178182_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71767729|gb|DR965666.1|DR965666
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|76280840|gb|DV020408.1|DV020408
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|91874701|gb|EB404658.1|EB404658
EST:     GTTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATTCTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCCCGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|78113320|gb|DV531712.1|DV531712
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|93013083|gb|EB638603.1|EB638603
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|78113319|gb|DV531711.1|DV531711
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|71756803|gb|DR954740.1|DR954740
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
EST: gi|71439158|gb|DR820208.1|DR820208
EST:     GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAA                         AAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC
genomic: GCTTTGGCATGGACACTACTGACGCTTTCAGCACTGACCATACTACTCAAgtacgcaacc ... cgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgcaaccatacatactatgtctcttccatcccctgtcgccatggcgttcacgaatcacaggaaacctgcaatccacgcgtttcagAAAATCGAAGGGATGCTCCAGCTCCACCACGAGGCGCTTGCGGTGCCTAGCTCTGCCCTGAGCAGACCTCCATTCGAGGCTATCGCGGACAGTACGCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG