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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagaaagtggcataagctaagtcttgcggcttccaattgataatgcttaaaagatattatctttttaagtgctatgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAG

Basic information

species Zea mays
transcript GRMZM2G178169_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178169_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g33830.2 (Oryza sativa), 3'ss of exon 5
gtattagaaagtggcataagctaagtcttgcggcttccaattgataatgcttaaaagatattatctttttaagtgctatgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAG
                            |   |     |  ||   ||| |||||    ||| |    |  | |   ||    || || |  || |  ||   |    ||    | ||| ||| |||      ||||||||||||| ||||| || ||||||||||| | ||||||||| ||||| || |  |||
---------------------------gtaaagagggaagctggcgatgtttaaatttgattttaacctccattagcatatgcttgatgagacaatactcaaattcacatcacta-actgtttggtt------acagGGATTACACGAATCCATATCTTCCTGTGAATCCAACAGCAATCGAGGGAATCGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101382157|gb|EB813134.1|EB813134
EST:     TTCTCTGCACATAANGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAA-CAGCAATTGAAGGGAT
genomic: TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaa ... gatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|6626417|gb|AW257949.1|AW257949
EST:     TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaa ... gatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|101399658|gb|EB821675.1|EB821675
EST:     TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtattagaaa ... gatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAG
                                    tattttgttgatttaa  TA-rich tract