1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctctatggagttatgtcaatgttttttagtattaatgtgcagttgttgattgtgtggtcaatacatgtccgctttctaatgaaaaatacacccttgttagGTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGCAGGAGGTAGTTCGAATGCTTCCGATCTTTTTGCATACTGTGCAGAACTTAAGGCATACATT
species | Zea mays |
transcript | GRMZM2G176699_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAG GTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGCCAG-AGGTAGTTEST: gi|71771081|gb|DR969018.1|DR969018
genomic: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAGgtaatcatgc ... cccttgttagGTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGC-AGGAGGTAGTT
EST: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAG GTGCCACAATCAATA-CCATGTTACCCTGGA-GTAAGATGCAGGAGGTAGTEST: gi|74244436|gb|DT652350.1|DT652350
genomic: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAGgtaatcatgc ... cccttgttagGTGCCACAATCA-TAACCATGTTACC-TGGAAGTAGGATGCAGGAGGTAGT
EST: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGGACATGGGCTGTCCCCAG GTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGCAGGAGGTAGTTCEST: gi|71764590|gb|DR962527.1|DR962527
genomic: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAGgtaatcatgc ... cccttgttagGTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGCAGGAGGTAGTTC
EST: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAG GTGCCCACA-TCATAACCATGTTACCTGGGAGTAGGATGCAGGAGGTAGTT
genomic: GTATCAAAGAAGTTGTGAAGCTTTCCGACTGGAACATGGGCTGTCCCCAGgtaatcatgc ... cccttgttagGTGCC-ACAATCATAACCATGTTACCTGGAAGTAGGATGCAGGAGGTAGTT
ttgattgtgtggtcaatacatgtccgctttctaatgaaaaatacacccttgttagGTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGCAGGAGGTAGTTCGAATGCTTCCGATCTTTTTGCATACTGTGCAGAACTTAAGGCATACATT
ttctaat putative branch site (score: 23)
cccttgtt putative PPT
tttctaatgaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctatggagttatgtcaatgttttttagtattaatgtgcagttgttgattgtgtggtcaatacatgtccgctttctaatgaaaaatacacccttgttagGTGCCACAATCATAACCATGTTACCTGGAAGTAGGATGCAGGAGGTAGTTCGAATGCTTCCGATCTTTTTGCATACTGTGCAGAACTTAAGGCATACATT
- - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - gcagttg
- - - - - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata